Read a .gb GenBank File
read_gb(file)File path or connection, that can be handled by readr::read_lines().
a list of class 'plasmid' which can be further coerced for plotting.
fl <- system.file("extdata", "petm20.gb", package = "plasmapR")
fl |>
read_gb() |>
as.data.frame()
#> index name type start end direction
#> 1 1 synthetic DNA construct source 1 7700 1
#> 2 2 f1 orim rep_origin 12 467 1
#> 3 3 AmpR promoter promoter 494 598 1
#> 4 4 AmpR CDS 599 1459 1
#> 5 5 ori rep_origin 1630 2218 1
#> 6 6 bom misc_feature 2404 2546 1
#> 7 7 rop CDS 2648 2839 -1
#> 8 8 lacI CDS 3648 4730 1
#> 9 9 lacI promoter promoter 4731 4808 1
#> 10 10 T7 promoter promoter 5121 5139 1
#> 11 11 lac operator protein_bind 5140 5164 1
#> 12 12 TrxA CDS 5209 5535 1
#> 13 13 6xHis CDS 5557 5574 1
#> 14 14 AviTag Insert R primer_bind 5578 5628 -1
#> 15 15 TEV Site CDS 5584 5604 1
#> 16 16 AviTag(TM) CDS 5611 5655 1
#> 17 17 AviTag Insert F primer_bind 5629 5673 1
#> 18 18 dsnPPR10-C2 CDS 5659 7503 1
#> 19 19 6xHis CDS 7544 7561 1
#> 20 20 T7 terminator terminator 7628 7675 1