Read the output of Tecan Plate Readers

Usage

plate_read_tecan(file, temp = FALSE, plate = NULL)

Arguments

file: File path to the .xlsx or .csv file.
temp: Logical, whether to include the temperature column.
plate: The size of the plate, such as 96 or 384, or its number of rows and columns. If NULL, the plate size recorded in the file is used, or else the smallest standard plate that holds all the wells.

Value

a tibble::tibble() of the values from the file. The well column holds well() IDs that know the size of the plate.

Examples


# read a .csv tecan file
fl <- system.file(
  'extdata', 'tecanON1.csv',
  package = 'wellr'
)

plate_read_tecan(fl)
#> # A tibble: 11,520 × 5
#>    cycle_nr time_s well       od600  lumi
#>       <dbl>  <dbl> <well:96>  <dbl> <dbl>
#>  1        1      0 A01       0.0459    -4
#>  2        1      0 A02       0.0455    -2
#>  3        1      0 A03       0.0456    -5
#>  4        1      0 A04       0.0448     3
#>  5        1      0 A05       0.0444   110
#>  6        1      0 A06       0.0452     6
#>  7        1      0 A07       0.0442   127
#>  8        1      0 A08       0.0454    -2
#>  9        1      0 A09       0.0458    -2
#> 10        1      0 A10       0.046     -3
#> # ℹ 11,510 more rows

# read a .xlsx tecan file
fl <- system.file(
  'extdata', 'tecanON1.xlsx',
  package = 'wellr'
)

plate_read_tecan(fl)
#> # A tibble: 11,520 × 5
#>    cycle_nr time_s well       od600  lumi
#>       <dbl>  <dbl> <well:96>  <dbl> <dbl>
#>  1        1      0 A01       0.0459    -4
#>  2        1      0 A02       0.0455    -2
#>  3        1      0 A03       0.0456    -5
#>  4        1      0 A04       0.0448     3
#>  5        1      0 A05       0.0444   110
#>  6        1      0 A06       0.0452     6
#>  7        1      0 A07       0.0442   127
#>  8        1      0 A08       0.0454    -2
#>  9        1      0 A09       0.0458    -2
#> 10        1      0 A10       0.0460    -3
#> # ℹ 11,510 more rows